IL_5UQ8_169

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

5UQ8|1|a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_169 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1731

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5UQ8|1|a|C|1399
5UQ8|1|a|5MC|1400
5UQ8|1|a|G|1401
*
5UQ8|1|a|C|1501
5UQ8|1|a|A|1502
5UQ8|1|a|A|1503
5UQ8|1|a|G|1504

Current chains

Chain a

16S rRNA

Nearby chains

Chain x

DnaX ribosomal frameshifting element

Chain y

Transfer RNA; tRNA