3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
C(5MC)G*CAAG
Length
7 nucleotides
Bulged bases
5UQ8|1|a|A|1503
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_169 not in the Motif Atlas
Homologous match to IL_6CZR_165
Geometric discrepancy: 0.1731
The information below is about IL_6CZR_165
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
5

Unit IDs

5UQ8|1|a|C|1399
5UQ8|1|a|5MC|1400
5UQ8|1|a|G|1401
*
5UQ8|1|a|C|1501
5UQ8|1|a|A|1502
5UQ8|1|a|A|1503
5UQ8|1|a|G|1504

Current chains

Chain a
16S rRNA

Nearby chains

Chain x
DnaX ribosomal frameshifting element
Chain y
Transfer RNA; tRNA

Coloring options:


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