IL_5UQ8_169
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- C(5MC)G*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 5UQ8|1|a|A|1503
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ8_169 not in the Motif Atlas
- Homologous match to IL_6CZR_165
- Geometric discrepancy: 0.1731
- The information below is about IL_6CZR_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5UQ8|1|a|C|1399
5UQ8|1|a|5MC|1400
5UQ8|1|a|G|1401
*
5UQ8|1|a|C|1501
5UQ8|1|a|A|1502
5UQ8|1|a|A|1503
5UQ8|1|a|G|1504
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain x
- DnaX ribosomal frameshifting element
- Chain y
- Transfer RNA; tRNA
Coloring options: