3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UQ8_173 not in the Motif Atlas
Homologous match to IL_5J7L_062
Geometric discrepancy: 0.1331
The information below is about IL_5J7L_062
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

5UQ8|1|a|G|1416
5UQ8|1|a|G|1417
5UQ8|1|a|A|1418
5UQ8|1|a|G|1419
*
5UQ8|1|a|U|1481
5UQ8|1|a|G|1482
5UQ8|1|a|A|1483
5UQ8|1|a|C|1484

Current chains

Chain a
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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