IL_5UQ8_187

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_187 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.1021

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5UQ8|1|A|G|1666
5UQ8|1|A|G|1667
5UQ8|1|A|A|1668
5UQ8|1|A|A|1669
5UQ8|1|A|C|1670
5UQ8|1|A|U|1671
5UQ8|1|A|C|1672
5UQ8|1|A|U|1673
5UQ8|1|A|G|1674
*
5UQ8|1|A|C|1990
5UQ8|1|A|U|1991
5UQ8|1|A|G|1992
5UQ8|1|A|U|1993
5UQ8|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain O

50S ribosomal protein L14