IL_5UQ8_189
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAGAAGC*GUGUAAAC
- Length
- 17 nucleotides
- Bulged bases
- 5UQ8|1|a|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ8_189 not in the Motif Atlas
- Homologous match to IL_6CZR_129
- Geometric discrepancy: 0.2045
- The information below is about IL_6CZR_129
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58819.1
- Basepair signature
- cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5UQ8|1|a|G|409
5UQ8|1|a|G|410
5UQ8|1|a|A|411
5UQ8|1|a|A|412
5UQ8|1|a|G|413
5UQ8|1|a|A|414
5UQ8|1|a|A|415
5UQ8|1|a|G|416
5UQ8|1|a|C|417
*
5UQ8|1|a|G|426
5UQ8|1|a|U|427
5UQ8|1|a|G|428
5UQ8|1|a|U|429
5UQ8|1|a|A|430
5UQ8|1|a|A|431
5UQ8|1|a|A|432
5UQ8|1|a|C|433
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
Coloring options: