IL_5UYK_016

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5UYK|1|01|G|801, 5UYK|1|01|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1327

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5UYK|1|01|G|674
5UYK|1|01|A|675
5UYK|1|01|A|676
5UYK|1|01|A|677
5UYK|1|01|C|678
*
5UYK|1|01|G|799
5UYK|1|01|A|800
5UYK|1|01|G|801
5UYK|1|01|A|802
5UYK|1|01|U|803
5UYK|1|01|A|804
5UYK|1|01|G|805
5UYK|1|01|C|806

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 14

50S ribosomal protein L15