3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
5UYK|1|01|G|801, 5UYK|1|01|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYK_016 not in the Motif Atlas
Homologous match to IL_7RQB_018
Geometric discrepancy: 0.1327
The information below is about IL_7RQB_018
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.6
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

5UYK|1|01|G|674
5UYK|1|01|A|675
5UYK|1|01|A|676
5UYK|1|01|A|677
5UYK|1|01|C|678
*
5UYK|1|01|G|799
5UYK|1|01|A|800
5UYK|1|01|G|801
5UYK|1|01|A|802
5UYK|1|01|U|803
5UYK|1|01|A|804
5UYK|1|01|G|805
5UYK|1|01|C|806

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 06
50S ribosomal protein L4
Chain 14
50S ribosomal protein L15

Coloring options:


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