3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
5UYK|1|01|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYK_033 not in the Motif Atlas
Homologous match to IL_7A0S_033
Geometric discrepancy: 0.1282
The information below is about IL_7A0S_033
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

5UYK|1|01|C|998
5UYK|1|01|U|999
5UYK|1|01|A|1000
5UYK|1|01|A|1001
5UYK|1|01|G|1002
*
5UYK|1|01|C|1153
5UYK|1|01|G|1154
5UYK|1|01|A|1155
5UYK|1|01|A|1156
5UYK|1|01|G|1157

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 02
5S ribosomal RNA; 5S rRNA
Chain 19
50S ribosomal protein L20
Chain 20
50S ribosomal protein L21
Chain 28
50S ribosomal protein L30

Coloring options:


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