IL_5UYK_040

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5UYK|1|01|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_040 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.2409

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5UYK|1|01|C|1043
5UYK|1|01|C|1044
5UYK|1|01|C|1045
5UYK|1|01|A|1046
5UYK|1|01|G|1047
5UYK|1|01|A|1048
5UYK|1|01|C|1049
5UYK|1|01|A|1050
5UYK|1|01|G|1051
*
5UYK|1|01|U|1108
5UYK|1|01|C|1109
5UYK|1|01|G|1110
5UYK|1|01|A|1111
5UYK|1|01|G|1112

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 10

50S ribosomal protein L10

Chain 34

50S ribosomal protein L36