IL_5UYK_041

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5UYK|1|01|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_041 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.5466

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5UYK|1|01|G|1059
5UYK|1|01|U|1060
5UYK|1|01|U|1061
5UYK|1|01|G|1062
*
5UYK|1|01|C|1076
5UYK|1|01|A|1077
5UYK|1|01|U|1078
5UYK|1|01|C|1079

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L11

Chain 15

50S ribosomal protein L16