IL_5UYK_048

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

5UYK|1|01|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_048 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2123

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5UYK|1|01|C|1319
5UYK|1|01|C|1320
5UYK|1|01|A|1321
5UYK|1|01|A|1322
5UYK|1|01|C|1323
*
5UYK|1|01|G|1331
5UYK|1|01|G|1332
5UYK|1|01|G|1333

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L22

Chain 22

50S ribosomal protein L23