IL_5UYK_084

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_084 not in the Motif Atlas

Geometric match to IL_4V8Q_188

Geometric discrepancy: 0.2696

The information below is about IL_4V8Q_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5UYK|1|01|U|2139
5UYK|1|01|G|2140
5UYK|1|01|G|2141
*
5UYK|1|01|C|2150
5UYK|1|01|U|2151
5UYK|1|01|G|2152

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 03

50S ribosomal protein L1

Chain K

30S ribosomal protein S11