IL_5UYK_099

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_099 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.1137

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5UYK|1|01|C|2652
5UYK|1|01|U|2653
5UYK|1|01|A|2654
5UYK|1|01|G|2655
5UYK|1|01|U|2656
5UYK|1|01|A|2657
5UYK|1|01|C|2658
*
5UYK|1|01|G|2663
5UYK|1|01|G|2664
5UYK|1|01|A|2665
5UYK|1|01|C|2666
5UYK|1|01|C|2667
5UYK|1|01|G|2668

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain Z

Elongation factor Tu 2