IL_5UYK_111
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYK_111 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1083
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5UYK|1|02|C|71
5UYK|1|02|G|72
5UYK|1|02|A|73
5UYK|1|02|U|74
5UYK|1|02|G|75
5UYK|1|02|G|76
5UYK|1|02|U|77
5UYK|1|02|A|78
5UYK|1|02|G|79
*
5UYK|1|02|C|97
5UYK|1|02|G|98
5UYK|1|02|A|99
5UYK|1|02|G|100
5UYK|1|02|A|101
5UYK|1|02|G|102
5UYK|1|02|U|103
5UYK|1|02|A|104
5UYK|1|02|G|105
Current chains
- Chain 02
- 5S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 15
- 50S ribosomal protein L16
- Chain 24
- 50S ribosomal protein L25
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