3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
5UYK|1|A|C|1400, 5UYK|1|A|A|1503
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYK_169 not in the Motif Atlas
Geometric match to IL_4V88_463
Geometric discrepancy: 0.2288
The information below is about IL_4V88_463
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
5

Unit IDs

5UYK|1|A|C|1399
5UYK|1|A|C|1400
5UYK|1|A|G|1401
*
5UYK|1|A|C|1501
5UYK|1|A|A|1502
5UYK|1|A|A|1503
5UYK|1|A|G|1504

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain V
mRNA
Chain W
Transfer RNA; tRNA

Coloring options:


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