IL_5UYL_016

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5UYL|1|01|G|801, 5UYL|1|01|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYL_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1352

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5UYL|1|01|G|674
5UYL|1|01|A|675
5UYL|1|01|A|676
5UYL|1|01|A|677
5UYL|1|01|C|678
*
5UYL|1|01|G|799
5UYL|1|01|A|800
5UYL|1|01|G|801
5UYL|1|01|A|802
5UYL|1|01|U|803
5UYL|1|01|A|804
5UYL|1|01|G|805
5UYL|1|01|C|806

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 14

50S ribosomal protein L15