IL_5UYL_041

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

5UYL|1|01|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYL_041 not in the Motif Atlas

Geometric match to IL_3NKB_002

Geometric discrepancy: 0.1652

The information below is about IL_3NKB_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5UYL|1|01|G|1087
5UYL|1|01|A|1088
5UYL|1|01|A|1089
5UYL|1|01|A|1090
*
5UYL|1|01|U|1101
5UYL|1|01|C|1102

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L11

Chain 34

50S ribosomal protein L36