IL_5UYL_097

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYL_097 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.1073

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5UYL|1|01|C|2652
5UYL|1|01|U|2653
5UYL|1|01|A|2654
5UYL|1|01|G|2655
5UYL|1|01|U|2656
5UYL|1|01|A|2657
5UYL|1|01|C|2658
*
5UYL|1|01|G|2663
5UYL|1|01|G|2664
5UYL|1|01|A|2665
5UYL|1|01|C|2666
5UYL|1|01|C|2667
5UYL|1|01|G|2668

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain Z

Elongation factor Tu 2