IL_5UYM_019

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYM_019 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0922

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5UYM|1|01|U|703
5UYM|1|01|G|704
5UYM|1|01|A|705
5UYM|1|01|A|706
5UYM|1|01|G|707
*
5UYM|1|01|U|724
5UYM|1|01|G|725
5UYM|1|01|G|726
5UYM|1|01|A|727
5UYM|1|01|G|728

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2