IL_5UYN_067

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

5UYN|1|01|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYN_067 not in the Motif Atlas

Homologous match to IL_4WF9_068

Geometric discrepancy: 0.2564

The information below is about IL_4WF9_068

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5UYN|1|01|G|1770
5UYN|1|01|C|1771
*
5UYN|1|01|G|1980
5UYN|1|01|A|1981
5UYN|1|01|U|1982

Current chains

Chain 01

23S ribosomal RNA

Nearby chains