IL_5UYN_181

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

5UYN|1|01|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYN_181 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.3213

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYN|1|01|G|1087
5UYN|1|01|A|1088
5UYN|1|01|A|1089
5UYN|1|01|A|1090
5UYN|1|01|G|1091
*
5UYN|1|01|C|1100
5UYN|1|01|U|1101
5UYN|1|01|C|1102

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 11

50S ribosomal protein L11

Chain 34

50S ribosomal protein L36