IL_5UYP_032
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5UYP|1|01|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYP_032 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0939
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
5UYP|1|01|C|998
5UYP|1|01|U|999
5UYP|1|01|A|1000
5UYP|1|01|A|1001
5UYP|1|01|G|1002
*
5UYP|1|01|C|1153
5UYP|1|01|G|1154
5UYP|1|01|A|1155
5UYP|1|01|A|1156
5UYP|1|01|G|1157
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 02
- 5S ribosomal RNA; 5S rRNA
- Chain 19
- 50S ribosomal protein L20
- Chain 20
- 50S ribosomal protein L21
- Chain 28
- 50S ribosomal protein L30
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