IL_5UYP_033

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_033 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1418

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

5UYP|1|01|U|1004
5UYP|1|01|C|1005
5UYP|1|01|C|1006
5UYP|1|01|C|1007
5UYP|1|01|A|1008
5UYP|1|01|A|1009
5UYP|1|01|A|1010
5UYP|1|01|G|1011
*
5UYP|1|01|C|1150
5UYP|1|01|A|1151

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L13

Chain 19

50S ribosomal protein L20