IL_5UYP_100

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

5UYP|1|01|U|2689, 5UYP|1|01|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_100 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.138

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5UYP|1|01|U|2687
5UYP|1|01|G|2688
5UYP|1|01|U|2689
5UYP|1|01|U|2690
5UYP|1|01|C|2691
*
5UYP|1|01|G|2718
5UYP|1|01|G|2719
5UYP|1|01|U|2720
5UYP|1|01|A|2721
5UYP|1|01|G|2722

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 16

50S ribosomal protein L17

Chain 18

50S ribosomal protein L19