IL_5UYP_180
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 5UYP|1|01|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYP_180 not in the Motif Atlas
- Homologous match to IL_5J7L_386
- Geometric discrepancy: 0.1167
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
5UYP|1|01|G|1666
5UYP|1|01|G|1667
5UYP|1|01|A|1668
5UYP|1|01|A|1669
5UYP|1|01|C|1670
5UYP|1|01|U|1671
5UYP|1|01|A|1672
5UYP|1|01|G|1673
5UYP|1|01|G|1674
*
5UYP|1|01|C|1990
5UYP|1|01|U|1991
5UYP|1|01|G|1992
5UYP|1|01|U|1993
5UYP|1|01|C|1994
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 13
- 50S ribosomal protein L14
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