IL_5UYP_181
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUAAUUGAUG*UUGAUCGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYP_181 not in the Motif Atlas
- Homologous match to IL_5J7L_387
- Geometric discrepancy: 0.141
- The information below is about IL_5J7L_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61249.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5UYP|1|01|U|1851
5UYP|1|01|U|1852
5UYP|1|01|A|1853
5UYP|1|01|A|1854
5UYP|1|01|U|1855
5UYP|1|01|U|1856
5UYP|1|01|G|1857
5UYP|1|01|A|1858
5UYP|1|01|U|1859
5UYP|1|01|G|1860
*
5UYP|1|01|U|1882
5UYP|1|01|U|1883
5UYP|1|01|G|1884
5UYP|1|01|A|1885
5UYP|1|01|U|1886
5UYP|1|01|C|1887
5UYP|1|01|G|1888
5UYP|1|01|A|1889
5UYP|1|01|A|1890
5UYP|1|01|G|1891
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 03
- 50S ribosomal protein L1
- Chain X
- Transfer RNA; tRNA
Coloring options: