IL_5UYQ_016

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5UYQ|1|01|G|801, 5UYQ|1|01|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1164

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5UYQ|1|01|G|674
5UYQ|1|01|A|675
5UYQ|1|01|A|676
5UYQ|1|01|A|677
5UYQ|1|01|C|678
*
5UYQ|1|01|G|799
5UYQ|1|01|A|800
5UYQ|1|01|G|801
5UYQ|1|01|A|802
5UYQ|1|01|U|803
5UYQ|1|01|A|804
5UYQ|1|01|G|805
5UYQ|1|01|C|806

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 14

50S ribosomal protein L15