IL_5UYQ_021
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5UYQ|1|01|G|776, 5UYQ|1|01|A|788, 5UYQ|1|01|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYQ_021 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.1686
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5UYQ|1|01|G|775
5UYQ|1|01|G|776
5UYQ|1|01|G|777
*
5UYQ|1|01|C|787
5UYQ|1|01|A|788
5UYQ|1|01|A|789
5UYQ|1|01|U|790
5UYQ|1|01|C|791
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain 06
- 50S ribosomal protein L4
- Chain 21
- 50S ribosomal protein L22
- Chain 32
- 50S ribosomal protein L34
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