IL_5UYQ_022

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

5UYQ|1|01|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_022 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.2026

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5UYQ|1|01|A|844
5UYQ|1|01|A|845
5UYQ|1|01|U|846
5UYQ|1|01|U|847
*
5UYQ|1|01|A|933
5UYQ|1|01|U|934

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L30