IL_5UYQ_044

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5UYQ|1|01|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_044 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1374

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5UYQ|1|01|C|1208
5UYQ|1|01|U|1209
5UYQ|1|01|G|1210
5UYQ|1|01|C|1211
5UYQ|1|01|G|1212
5UYQ|1|01|A|1213
5UYQ|1|01|A|1214
5UYQ|1|01|G|1215
*
5UYQ|1|01|U|1234
5UYQ|1|01|G|1235
5UYQ|1|01|G|1236
5UYQ|1|01|A|1237
5UYQ|1|01|G|1238

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L20