IL_5UYQ_093

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5UYQ|1|01|G|2576, 5UYQ|1|01|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_093 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1479

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5UYQ|1|01|C|2510
5UYQ|1|01|U|2511
5UYQ|1|01|C|2512
*
5UYQ|1|01|G|2574
5UYQ|1|01|C|2575
5UYQ|1|01|G|2576
5UYQ|1|01|A|2577
5UYQ|1|01|G|2578

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 30

50S ribosomal protein L32