IL_5UYQ_098

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_098 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1188

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5UYQ|1|01|C|2652
5UYQ|1|01|U|2653
5UYQ|1|01|A|2654
5UYQ|1|01|G|2655
5UYQ|1|01|U|2656
5UYQ|1|01|A|2657
5UYQ|1|01|C|2658
*
5UYQ|1|01|G|2663
5UYQ|1|01|G|2664
5UYQ|1|01|A|2665
5UYQ|1|01|C|2666
5UYQ|1|01|C|2667
5UYQ|1|01|G|2668

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain Y

Transfer RNA; tRNA

Chain Z

Elongation factor Tu 2