IL_5UYQ_141

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_141 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.1283

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5UYQ|1|A|G|654
5UYQ|1|A|A|655
*
5UYQ|1|A|U|751
5UYQ|1|A|G|752
5UYQ|1|A|A|753
5UYQ|1|A|C|754

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15