IL_5UYQ_148

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_148 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1105

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5UYQ|1|A|G|887
5UYQ|1|A|G|888
5UYQ|1|A|A|889
5UYQ|1|A|G|890
5UYQ|1|A|U|891
5UYQ|1|A|A|892
5UYQ|1|A|C|893
5UYQ|1|A|G|894
*
5UYQ|1|A|U|905
5UYQ|1|A|A|906
5UYQ|1|A|A|907
5UYQ|1|A|A|908
5UYQ|1|A|A|909
5UYQ|1|A|C|910

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain L

30S ribosomal protein S12