IL_5UYQ_156
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGCAU*AUGG
- Length
- 10 nucleotides
- Bulged bases
- 5UYQ|1|A|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYQ_156 not in the Motif Atlas
- Geometric match to IL_5EW4_001
- Geometric discrepancy: 0.368
- The information below is about IL_5EW4_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_43644.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5UYQ|1|A|C|1051
5UYQ|1|A|U|1052
5UYQ|1|A|G|1053
5UYQ|1|A|C|1054
5UYQ|1|A|A|1055
5UYQ|1|A|U|1056
*
5UYQ|1|A|A|1204
5UYQ|1|A|U|1205
5UYQ|1|A|G|1206
5UYQ|1|A|G|1207
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain N
- 30S ribosomal protein S14
- Chain V
- mRNA
- Chain Y
- Transfer RNA; tRNA
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