IL_5UYQ_163

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

5UYQ|1|A|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_163 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.1402

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

5UYQ|1|A|U|1247
5UYQ|1|A|A|1248
5UYQ|1|A|C|1249
5UYQ|1|A|A|1250
5UYQ|1|A|A|1251
5UYQ|1|A|A|1252
5UYQ|1|A|G|1253
*
5UYQ|1|A|C|1284
5UYQ|1|A|A|1285
5UYQ|1|A|U|1286
5UYQ|1|A|A|1287
5UYQ|1|A|A|1288
5UYQ|1|A|A|1289
5UYQ|1|A|G|1290

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14