3D structure

PDB id
5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYQ_168 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1637
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

5UYQ|1|A|G|1401
5UYQ|1|A|C|1402
5UYQ|1|A|C|1403
5UYQ|1|A|C|1404
*
5UYQ|1|A|G|1497
5UYQ|1|A|U|1498
5UYQ|1|A|A|1499
5UYQ|1|A|A|1500
5UYQ|1|A|C|1501

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain V
mRNA
Chain W
Transfer RNA; tRNA

Coloring options:


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