IL_5UZ4_019

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2436

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5UZ4|1|A|U|409
5UZ4|1|A|G|410
5UZ4|1|A|A|411
5UZ4|1|A|A|412
5UZ4|1|A|G|413
5UZ4|1|A|A|414
5UZ4|1|A|A|415
5UZ4|1|A|G|416
*
5UZ4|1|A|U|427
5UZ4|1|A|G|428
5UZ4|1|A|U|429
5UZ4|1|A|A|430
5UZ4|1|A|A|431
5UZ4|1|A|A|432
5UZ4|1|A|G|433

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S ribosomal protein S4