IL_5UZ4_021

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5UZ4|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_021 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1535

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5UZ4|1|A|G|446
5UZ4|1|A|G|447
5UZ4|1|A|A|448
5UZ4|1|A|G|449
5UZ4|1|A|G|450
*
5UZ4|1|A|C|483
5UZ4|1|A|G|484
5UZ4|1|A|U|485
5UZ4|1|A|U|486
5UZ4|1|A|A|487
5UZ4|1|A|C|488

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16