IL_5UZ4_025
3D structure
- PDB id
- 5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5UZ4|1|A|A|532, 5UZ4|1|A|U|534, 5UZ4|1|A|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UZ4_025 not in the Motif Atlas
- Geometric match to IL_5J7L_025
- Geometric discrepancy: 0.2363
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5UZ4|1|A|G|515
5UZ4|1|A|U|516
5UZ4|1|A|G|517
5UZ4|1|A|C|518
5UZ4|1|A|C|519
5UZ4|1|A|A|520
5UZ4|1|A|G|521
*
5UZ4|1|A|C|528
5UZ4|1|A|G|529
5UZ4|1|A|G|530
5UZ4|1|A|U|531
5UZ4|1|A|A|532
5UZ4|1|A|A|533
5UZ4|1|A|U|534
5UZ4|1|A|A|535
5UZ4|1|A|C|536
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain Z
- Small ribosomal subunit biogenesis GTPase RsgA
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