IL_5UZ4_035

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUGUAG*CGUAGAGAUC

Length

17 nucleotides

Bulged bases

5UZ4|1|A|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_035 not in the Motif Atlas

Geometric match to IL_4V88_508

Geometric discrepancy: 0.2615

The information below is about IL_4V88_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99095.1

Basepair signature

cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5UZ4|1|A|G|682
5UZ4|1|A|G|683
5UZ4|1|A|U|684
5UZ4|1|A|G|685
5UZ4|1|A|U|686
5UZ4|1|A|A|687
5UZ4|1|A|G|688
*
5UZ4|1|A|C|699
5UZ4|1|A|G|700
5UZ4|1|A|U|701
5UZ4|1|A|A|702
5UZ4|1|A|G|703
5UZ4|1|A|A|704
5UZ4|1|A|G|705
5UZ4|1|A|A|706
5UZ4|1|A|U|707
5UZ4|1|A|C|708

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S ribosomal protein S11