IL_5UZ4_037

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_037 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.1961

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5UZ4|1|A|C|779
5UZ4|1|A|A|780
5UZ4|1|A|A|781
5UZ4|1|A|A|782
5UZ4|1|A|C|783
*
5UZ4|1|A|G|799
5UZ4|1|A|G|800
5UZ4|1|A|U|801
5UZ4|1|A|A|802
5UZ4|1|A|G|803

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S ribosomal protein S11