IL_5UZ4_042

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGU*ACAC

Length

7 nucleotides

Bulged bases

5UZ4|1|A|A|1227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_042 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3706

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

5UZ4|1|A|G|953
5UZ4|1|A|G|954
5UZ4|1|A|U|955
*
5UZ4|1|A|A|1225
5UZ4|1|A|C|1226
5UZ4|1|A|A|1227
5UZ4|1|A|C|1228

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA