IL_5UZ4_045

3D structure

PDB id

5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5UZ4|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UZ4_045 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.2614

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5UZ4|1|A|G|1048
5UZ4|1|A|U|1049
5UZ4|1|A|G|1050
*
5UZ4|1|A|C|1208
5UZ4|1|A|C|1209

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14