IL_5V3I_006

3D structure

PDB id

5V3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - wild-type C634

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GAC*GCAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V3I_006 not in the Motif Atlas

Geometric match to IL_4R4V_006

Geometric discrepancy: 0.1139

The information below is about IL_4R4V_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19687.1

Basepair signature

cWW-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5V3I|1|A|G|724
5V3I|1|A|A|725
5V3I|1|A|C|726
*
5V3I|1|A|G|749
5V3I|1|A|C|750
5V3I|1|A|A|751
5V3I|1|A|G|752
5V3I|1|A|C|753

Current chains

Chain A

VS Ribozyme RNA

Nearby chains