IL_5V7Q_035

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_035 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.3783

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5V7Q|1|A|C|1005
5V7Q|1|A|C|1006
5V7Q|1|A|G|1007
5V7Q|1|A|A|1008
5V7Q|1|A|U|1009
5V7Q|1|A|G|1010
*
5V7Q|1|A|C|1026
5V7Q|1|A|U|1027
5V7Q|1|A|G|1028
5V7Q|1|A|A|1029
5V7Q|1|A|C|1030
5V7Q|1|A|G|1031

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25