IL_5V7Q_057

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAAAC*GGGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_057 not in the Motif Atlas

Geometric match to IL_3IGI_002

Geometric discrepancy: 0.2823

The information below is about IL_3IGI_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

5V7Q|1|A|A|1579
5V7Q|1|A|A|1580
5V7Q|1|A|A|1581
5V7Q|1|A|A|1582
5V7Q|1|A|C|1583
*
5V7Q|1|A|G|1621
5V7Q|1|A|G|1622
5V7Q|1|A|G|1623
5V7Q|1|A|C|1624
5V7Q|1|A|U|1625

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2