IL_5V7Q_059

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_059 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.2826

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

5V7Q|1|A|C|1595
5V7Q|1|A|U|1596
5V7Q|1|A|C|1597
*
5V7Q|1|A|G|1608
5V7Q|1|A|U|1609
5V7Q|1|A|G|1610

Current chains

Chain A

23S rRNA

Nearby chains