IL_5V7Q_065

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CACUAAU

Length

9 nucleotides

Bulged bases

5V7Q|1|A|U|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_065 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.5397

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

5V7Q|1|A|A|1719
5V7Q|1|A|G|1720
*
5V7Q|1|A|C|1743
5V7Q|1|A|A|1744
5V7Q|1|A|C|1745
5V7Q|1|A|U|1746
5V7Q|1|A|A|1747
5V7Q|1|A|A|1748
5V7Q|1|A|U|1749

Current chains

Chain A

23S rRNA

Nearby chains