IL_5V7Q_082

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_082 not in the Motif Atlas

Homologous match to IL_7A0S_071

Geometric discrepancy: 0.2509

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

5V7Q|1|A|G|2171
5V7Q|1|A|C|2172
*
5V7Q|1|A|G|2202
5V7Q|1|A|C|2203
5V7Q|1|A|A|2204
5V7Q|1|A|C|2205

Current chains

Chain A

23S rRNA

Nearby chains