IL_5V7Q_083

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5V7Q|1|A|A|2176, 5V7Q|1|A|U|2182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_083 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.3469

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5V7Q|1|A|C|2172
5V7Q|1|A|G|2173
5V7Q|1|A|A|2174
5V7Q|1|A|A|2175
5V7Q|1|A|A|2176
5V7Q|1|A|U|2177
5V7Q|1|A|U|2178
5V7Q|1|A|C|2179
5V7Q|1|A|C|2180
5V7Q|1|A|U|2181
5V7Q|1|A|U|2182
5V7Q|1|A|G|2183
*
5V7Q|1|A|C|2199
5V7Q|1|A|C|2200
5V7Q|1|A|U|2201
5V7Q|1|A|G|2202

Current chains

Chain A

23S rRNA

Nearby chains