IL_5V7Q_089

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUGUGUAGGAUAGGUGGGAGACUGUGAAACCUCGAC*GUUGGGGCGGAGUCGUUGUUGAAAUACCACUCUGAU

Length

74 nucleotides

Bulged bases

5V7Q|1|A|G|2347, 5V7Q|1|A|U|2348, 5V7Q|1|A|U|2367, 5V7Q|1|A|A|2371, 5V7Q|1|A|A|2372, 5V7Q|1|A|U|2386, 5V7Q|1|A|U|2387, 5V7Q|1|A|G|2394, 5V7Q|1|A|A|2395, 5V7Q|1|A|U|2401, 5V7Q|1|A|G|2402, 5V7Q|1|A|C|2414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V7Q|1|A|G|2343
5V7Q|1|A|U|2344
5V7Q|1|A|U|2345
5V7Q|1|A|U|2346
5V7Q|1|A|G|2347
5V7Q|1|A|U|2348
5V7Q|1|A|G|2349
5V7Q|1|A|U|2350
5V7Q|1|A|A|2351
5V7Q|1|A|G|2352
5V7Q|1|A|G|2353
5V7Q|1|A|A|2354
5V7Q|1|A|U|2355
5V7Q|1|A|A|2356
5V7Q|1|A|G|2357
5V7Q|1|A|G|2358
5V7Q|1|A|U|2359
5V7Q|1|A|G|2360
5V7Q|1|A|G|2361
5V7Q|1|A|G|2362
5V7Q|1|A|A|2363
5V7Q|1|A|G|2364
5V7Q|1|A|A|2365
5V7Q|1|A|C|2366
5V7Q|1|A|U|2367
5V7Q|1|A|G|2368
5V7Q|1|A|U|2369
5V7Q|1|A|G|2370
5V7Q|1|A|A|2371
5V7Q|1|A|A|2372
5V7Q|1|A|A|2373
5V7Q|1|A|C|2374
5V7Q|1|A|C|2375
5V7Q|1|A|U|2376
5V7Q|1|A|C|2377
5V7Q|1|A|G|2378
5V7Q|1|A|A|2379
5V7Q|1|A|C|2380
*
5V7Q|1|A|G|2385
5V7Q|1|A|U|2386
5V7Q|1|A|U|2387
5V7Q|1|A|G|2388
5V7Q|1|A|G|2389
5V7Q|1|A|G|2390
5V7Q|1|A|G|2391
5V7Q|1|A|C|2392
5V7Q|1|A|G|2393
5V7Q|1|A|G|2394
5V7Q|1|A|A|2395
5V7Q|1|A|G|2396
5V7Q|1|A|U|2397
5V7Q|1|A|C|2398
5V7Q|1|A|G|2399
5V7Q|1|A|U|2400
5V7Q|1|A|U|2401
5V7Q|1|A|G|2402
5V7Q|1|A|U|2403
5V7Q|1|A|U|2404
5V7Q|1|A|G|2405
5V7Q|1|A|A|2406
5V7Q|1|A|A|2407
5V7Q|1|A|A|2408
5V7Q|1|A|U|2409
5V7Q|1|A|A|2410
5V7Q|1|A|C|2411
5V7Q|1|A|C|2412
5V7Q|1|A|A|2413
5V7Q|1|A|C|2414
5V7Q|1|A|U|2415
5V7Q|1|A|C|2416
5V7Q|1|A|U|2417
5V7Q|1|A|G|2418
5V7Q|1|A|A|2419
5V7Q|1|A|U|2420

Current chains

Chain A

23S rRNA

Nearby chains